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Omega tau podcast – viruses, bacteria, and other parasites

17 July 2011 by Vincent Racaniello

omega tau podcastAfter a listener made the Omega tau podcast his pick of the week on TWiV129, I sent a note to the show’s author, Marcus Völter. He responded by inviting me on his program. I brought Dickson Despommier with me and we recorded a wide-ranging conversation on viruses, bacteria, and parasites. It is very basic, so if you have ever felt that TWiV, TWiP, or TWiM are too advanced, you might like this episode.

[powerpress url=”http://traffic.libsyn.com/omegataupodcast/omegatau-70-virusesBacteriaParasites.mp3″]

Click the arrow above to play, or right-click to download Omega tau 70 (85 MB .mp3, 55 minutes).

Omega tau is a podcast covering interesting topics in science and engineering, co-hosted by Marcus Völter and Nora Ludewig.

Filed Under: Information Tagged With: bacteria, microbe, parasite, podcast, viral, virology, virus

This Week in Microbiology (TWiM) #11: Chickens, antibiotics, and asthma

14 July 2011 by Vincent Racaniello

chicken farmHosts: Vincent Racaniello, Michael Schmidt, Margaret McFall-Ngai, and Elio Schaecter

On episode #11 of the podcast This Week in Microbiology, Vincent, Margaret, Michael and Elio review the presence of extended spectrum beta-lactamase genes in chicken meat and in humans, and a beneficial effect of Helicobacter pylori colonization on the development of allergen-induced asthma.

[powerpress url=”http://traffic.libsyn.com/twimshow/TWiM011.mp3″]

Click the arrow above to play, or right click to download TWiM #11 (47 MB, .mp3, 68 minutes).

Subscribe to TWiM (free) on iTunes, Zune Marketplace, via RSS feed, by email or listen on your mobile device with the Microbeworld app.

Links for this episode:

  • Beta-lactamase genes in Enterobacteriaceae of humans and chickens (EID)
  • Is drug resistance in humans coming from chickens? (Wired)
  • Pew Commission on industrial farm animal production
  • H. pylori infection prevents asthma in mice (JCI)
  • Consequences of disappearing human microbiota (Nat Rev Micro)
  • Letters read on TWiM #11

Send your microbiology questions and comments (email or mp3 file) to twim@microbe.tv, or call them in to 908-312-0760. You can also post articles that you would like us to discuss at microbeworld.org and tag them with twim.

Filed Under: This Week in Microbiology Tagged With: antibiotics, asthma, beta, chickens, food, genes, helicobacter, lactamase, meat, microbe, microbiology, pylori, spectrum

TWiM 10: A symbiotic cloaking device

29 June 2011 by Vincent Racaniello

euprymna scolopesHosts: Vincent Racaniello, Michael Schmidt, Dickson Despommier, Margaret McFall-Ngai, and Elio Schaecter

On episode #10 of the podcast This Week in Microbiology, Vincent, Margaret, Elio, Michael and Dickson discuss the symbiosis between the Hawaiian bobtail squid and the luminous, gram-negative bacterium Vibrio fischeri.

[powerpress url=”http://traffic.libsyn.com/twimshow/TWiM010.mp3″]

Click the arrow above to play, or right click to download TWiM #10 (47 MB, .mp3, 68 minutes).

Subscribe to TWiM (free) on iTunes, Zune Marketplace, via RSS feed, by email or listen on your mobile device with the Microbeworld app.

Links for this episode:

  • V. fisheri factors that trigger squid tissue development (Science)
  • Transcriptional patterns of the Vibrio-squid diel rythmn (PNAS)
  • The Hawaiian bobtail squid (Microbeworld)
  • Microbes pull strings in the human body (ScienceNews)
  • Letters read on TWiM #10

Send your microbiology questions and comments (email or mp3 file) to twim@microbe.tv, or call them in to 908-312-0760. You can also post articles that you would like us to discuss at microbeworld.org and tag them with twim.

Filed Under: This Week in Microbiology Tagged With: bacteria, bobtail squid, gram negative, luminous, microbe, mutualism, symbiosis, vibrio fischeri

TWiM 7 – Cycles of life and death, light and dark

19 May 2011 by Vincent Racaniello

cyanobacteriaHosts: Vincent Racaniello, Margaret McFall-Ngai, Cliff Mintz, Elio Schaecter, and Michael Schmidt.

On episode #7 of the podcast This Week in Microbiology, Vincent, Cliff, Elio, Margaret, and Michael discuss programmed cell death in E. coli, and the daily synthesis and degradation of enzymes needed for photosynthesis and nitrogen fixation by cyanobacteria.

[powerpress url=”http://traffic.libsyn.com/twimshow/TWiM007.mp3″]

Click the arrow above to play, or right click to download TWiM #7 (44.5 MB, .mp3, 64 minutes).

Subscribe to TWiM (free) on iTunes, Zune Marketplace, via RSS feed, by email or listen on your mobile device with the Microbeworld app.

Image of Cyanobacteria in Lake Littoistenjärvi by Stefe via flickr

Links for this episode:

  • E. coli extracelluar death factor EDF
  • mRNA cleavage by MazF toxin
  • Myxococcus programmed cell death
  • Using toxins in antimicrobial bacteriophage
  • Death as an option (Small Things Considered)
  • Cycling of metalloenzyme inventories in Crocosphaera watsonii (PNAS)
  • Growing a green future (Small Things Considered)
  • Letters read on TWiM #7

Send your microbiology questions and comments (email or mp3 file) to twim@microbe.tv, or call them in to 908-312-0760. You can also post articles that you would like us to discuss at microbeworld.org and tag them with twim.

Filed Under: This Week in Microbiology Tagged With: bacteria, crocosphaera, cyanobacteria, ecoli, extracellular death factor, microbe, nitrogen fixation, nitrogenase, photosynthesis, programmed cell death, toxin-antitoxin

New swine influenza viruses in humans

24 April 2009 by Vincent Racaniello

swineA new strain of swine influenza virus has been recently isolated from seven persons in the US. Is it time to break out the swine flu vaccine of 1976?

Last week the CDC reported that swine influenza virus had been isolated from two children with respiratory illness in California. The cases were not linked and the children recovered from the illness. The virus was identified as a swine influenza H1N1 strain, similar to viruses that have circulated in American pigs for the past ten years. However some of the viral genes are derived from Eurasian swine influenza viruses. The isolates are new because this particular combination of swine influenza virus RNAs has not been observed before among swine or human viruses.

A similar virus was subsequently identified in five additional individuals in Texas. It’s curious that one of the California children had traveled to Texas before becoming ill, but whether or not the cases are related has not been revealed.

What is the origin of these new swine viruses? None of the people who were infected had known contact with pigs. Others must have acquired the virus from pigs, who then passed it on – demonstrating that the virus can be transmitted among humans.

At the moment these infections don’t seem to be cause for alarm. Because influenza virus surveillance is more intense than ever before, it is likely that new viruses will always be detected. Furthermore, respiratory disease caused by these new viruses has not been very severe. Another mitigating factor is that the influenza season is nearly over – viral transmission wanes when the weather becomes warmer and more humid.

It is believed that swine influenza originated in 1918-19, when pigs became infected with the pandemic influenza virus strain. Since that time, the H1N1 swine virus has been transmitted back to humans. The hypothesis for the origin of swine influenza is supported by the finding that pigs can be experimentally infected with the human 1918 pandemic influenza virus strain. Furthermore, other human influenza virus strains are known to infect pigs. For example, in the early 1970s, a human H3N2 subtype entered the European swine population.

Pigs can be infected with both human and avian influenza virus strains because the cells of their respiratory tract bear receptors for both kinds of viruses. Based on this observation, it has been suggested that influenza viruses pass from birds through pigs on their way to infecting people. For example, if a pig is infected with avian and human influenza A viruses, reassortment of the viral RNAs occurs, leading to new virus strains to which humans are not immune. The 1957 and 1968 human pandemic viruses were reassortants of human and bird strains, although there is no evidence that these viruses arose in pigs. The role of pigs as a ‘mixing vessel’ for influenza virus has been questioned in view of the recent transmission of avian influenza viruses directly to humans.

Swine influenza viruses probably routinely pass among humans and swine; in this case they were detected as a consequence of heightened surveillance. Gerald Ford won’t be rolling over in his grave over this incident.

Weingartl, H., Albrecht, R., Lager, K., Babiuk, S., Marszal, P., Neufeld, J., Embury-Hyatt, C., Lekcharoensuk, P., Tumpey, T., Garcia-Sastre, A., & Richt, J. (2009). Experimental Infection of Pigs with the Human 1918 Pandemic Influenza Virus Journal of Virology, 83 (9), 4287-4296 DOI: 10.1128/JVI.02399-08

de Jong, J., Smith, D., Lapedes, A., Donatelli, I., Campitelli, L., Barigazzi, G., Van Reeth, K., Jones, T., Rimmelzwaan, G., Osterhaus, A., & Fouchier, R. (2007). Antigenic and Genetic Evolution of Swine Influenza A (H3N2) Viruses in Europe Journal of Virology, 81 (8), 4315-4322 DOI: 10.1128/JVI.02458-06

Van Reeth, K. (2007). Avian and swine influenza viruses: our current understanding of the zoonotic risk Veterinary Research, 38 (2), 243-260 DOI: 10.1051/vetres:2006062

Filed Under: Information Tagged With: 1918, avian influenza, H1N1, influenza, microbe, pandemic, pig, swine, swine influenza, viral, virus

Could Rift Valley fever come to the US?

23 April 2009 by Vincent Racaniello

rift-valleyIn an NYTimes Op-Ed article called “The Scary Caterpillar”, Jeffrey Lockwood wrote about potential use of a virus as a weapon of bioterrorism:

What if a terrorist group announced that their operatives had introduced Rift Valley fever into the United States? This mosquito-borne disease would make West Nile virus look like a case of the sniffles. Given that virtually every corner of America has a native species of mosquito capable of transmitting the virus, Rift Valley fever could spread across the nation. Hundreds of thousands of people could be sickened, with thousands dying and many more falling blind. The livestock industry could lose billions of dollars as animals aborted their fetuses and succumbed to bloody diarrhea. Imagine the fear if every mosquito bite this summer could be the precursor of a disease that would cause your brain to become inflamed or your internal organs to hemorrhage?

To me it reads like a movie script, not a serious assessment. Let’s dissect the statement and find out the truth.

Rift Valley fever virus (RVFV) is a member of the Bunyaviridae, a large family of enveloped, RNA containing viruses that includes the well known hantaviruses. The virus was first isolated in 1930 from a lamb during investigation of a disease that was causing abortion and mortality in Kenyan sheep. Since then the virus has caused large outbreaks of disease in livestock. Because infection may lead to high rates of abortion and death, the virus has substantial economic impact. The virus is transmitted among livestock by mosquito vectors. Epizootics often occur when precipitation is high, favoring mosquito breeding.

Outbreaks were confined to livestock in Africa until September 2000 when the disease was observed in Saudi Arabia and Yemen. These epidemics were believed to be a consequence of more abundant mosquito populations that resulted from heavy rain and flooding near the Asir mountains. There is some concern that the virus might spread to Europe, but that has not been observed.

RVFV may also infect humans; in the vast majority of such cases, transmission occurs by direct contact with the blood or organs of infected animals. Some infections are transmitted by mosquitoes, but this is certainly not the main route of human infection.

How serious is human disease caused by RVFV? Most cases are mild, and involve non-specific symptoms including fever, muscle and joint pain, and headache; neck stiffness and vomiting may also occur. About 1% of infected patients may develop more serious disease including eye infection, meningoencephalitis, and hemorrhagic fever. Fatality is typically less than 1%, although in the outbreak in Yemen and Saudi Arabia it was 12%.

What mosquitoes are known to carry RVFV? The principal vector appears to be mosquitoes of the Aedes genus, although Culex species have been shown to transmit the virus in the laboratory. However, the particular species known to transmit RVFV in Africa are not the predominant type of mosquito in the US.

It is clear that nearly every statement in the paragraph reproduced above from “The Scary Caterpillar” is an exaggeration. Rift Valley disease usually does not make West Nile encephalitis look like a case of the sniffles; every corner of America does not have a mosquito capable of transmitting the virus, and the disease severity is overstated. Whether or not the virus could be entrenched in the US is not known  – we might not have the proper climate for the levels of mosquito infestation that is required for transmission. Like all viruses, RVFV is capable of changing so that it could cause extensive human disease in the US – but our current understanding of the viral disease is completely inconsistent with Lockwood’s description.

There are other bothersome errors in the passage. The writer calls Rift Valley Fever a ‘mosquito borne disease’, but readers of virology blog know that it is the virus that is borne by the mosquito, not the disease. And the terrorists would not be introducing the disease into the US – they would introduce the virus. Finally, the sentence “This mosquito-borne disease would make West Nile virus look like a case of the sniffles” just isn’t right – you can’t compare a disease with a virus. But these are small errors when compared with the outright exaggerations of the article.

Perhaps the fact that the author of the Times piece, Jeffrey A. Lockwood, is not a virologist, but a professor of natural sciences and humanities at the University of Wyoming, explains why he does not understand the biology of Rift Valley fever virus.

Moutailler, S., Krida, G., Schaffner, F., Vazeille, M., & Failloux, A. (2008). Potential Vectors of Rift Valley Fever Virus in the Mediterranean Region Vector-Borne and Zoonotic Diseases, 8 (6), 749-754 DOI: 10.1089/vbz.2008.0009

Turell, M., Dohm, D., Mores, C., Terracina, L., Wallette, D., Hribar, L., Pecor, J., & Blow, J. (2008). Potential for North American Mosquitoes to Transmit Rift Valley Fever Virus Journal of the American Mosquito Control Association, 24 (4), 502-507 DOI: 10.2987/08-5791.1

Filed Under: Commentary, Information Tagged With: bunyavirus, encephalitis, hemorrhagic fever, microbe, mosquito, RIft Valley fever virus, viral, virus

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by Vincent Racaniello

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