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MDA5

Innately Immune

2 September 2021 by Gertrud U. Rey

by Gertrud U. Rey

It is still not entirely clear why children are less susceptible to severe COVID-19. Early hypotheses included the possibility that children may have a stronger innate immune response, which is the response that occurs upon an initial encounter with a pathogen. Results from a recent study support this hypothesis.

To clarify why children have an enhanced ability to control a SARS-CoV-2 infection, the authors of the study collected nasal samples from SARS-CoV-2-negative and SARS-CoV-2-positive children and adults ranging in age from 4 weeks to 77 years. The presence of viral RNA in samples from SARS-CoV-2-positive participants was confirmed by PCR. The samples were also analyzed for the presence of different cell types using single cell RNA sequencing, a method that reveals the RNA expression profiles of individual cells. The authors detected 33 different cell types in the upper respiratory tract of all tested individuals, including 21 immune and 12 epithelial cell subtypes. The differences in the cell compositions of children and adults were quite dramatic – while nasal samples from healthy adults rarely contained immune cells, samples from children contained high levels of almost every immune cell subset, with neutrophils representing a substantial portion of the cell population. Neutrophils are an essential part of the innate immune system because they accumulate quickly at a site of infection, where they ingest pathogens and recruit and activate other immune cells.

Despite this difference in cell composition in the nasal mucosa of children and adults, the expression level of ACE2 (the SARS-CoV-2 binding target), was similar in both age groups. This result is contrary to previous suggestions that children may express less ACE2, but it is consistent with reports indicating that the frequency of SARS-CoV-2 infection in children is similar to that of adults.

Sentinel cells of the innate immune system recognize invading pathogens by sensing structurally conserved molecular motifs in infectious microbes. This sensing occurs through various pattern recognition receptors on or in the immune cells present in most tissues, like the well-characterized RIG-I-like receptors. Together with two other proteins, MDA5 and LGP2, RIG-I-like receptors detect the presence of viral RNA inside our cells and trigger a cascade of events that mobilize immune cells such as macrophages, neutrophils, and dendritic cells to the site of infection. Once there, these immune cells produce pro-inflammatory signaling proteins known as cytokines, which then cue other responses and prime adaptive T and B cells for future functions. Sensing of viral RNA by RIG-I and MDA5 initiates the production of a cytokine called interferon, a signaling protein that triggers downstream protective defenses.

When the authors compared the baseline expression of RIG-I-, MDA5-, and LGP2-encoding genes in the upper respiratory tract epithelial cells of healthy children and adults, they found that healthy children expressed significantly higher levels of these genes compared to healthy adults and SARS-CoV-2-positive adults who were in the early phase of infection. Samples from healthy children also contained a subpopulation of cytotoxic T cells that was absent in adults, and these T cells produced high levels of interferon gamma, a cytokine that inhibits viral replication and induces macrophages to engulf and digest pathogens.

When children became infected with SARS-CoV-2, they produced significantly higher levels of interferon gamma compared to SARS-CoV-2-positive adults, both in the early and later phases of infection. This observation is particularly interesting when considering that impaired interferon responses are a hallmark of severe COVID-19 and that SARS-CoV-2 is highly susceptible to interferon treatment. Furthermore, samples from SARS-CoV-2-infected children contained a subpopulation of SARS-CoV-2-specific memory T cells that was nearly absent in adults, suggesting that children might have an increased ability to respond to future SARS-CoV-2 reinfections. 

The increased numbers of innate immune cells and increased expression of pattern recognition receptor genes in the upper airways of children may facilitate a more efficient innate response to SARS-CoV-2 infection, leading to reduced viral replication and faster clearance of virus. This type of innate immune response seems to be delayed in older adults, and in an effort to “catch up,” may result in excessive inflammation, thereby ultimately causing more severe damage. Although there are likely more factors at play, this study brings us one step closer to understanding why COVID-19 is generally less severe in children.

Filed Under: Basic virology, Gertrud Rey Tagged With: ACE2, children, COVID-19, cytokine, innate immune response, innate immunity, innate sensor, interferon gamma, MDA5, memory T cells, neutrophil, RIG-I, SARS-CoV-2

An inborn error of innate immunity leading to severe rhinovirus infections

13 December 2018 by Vincent Racaniello

rhinovirus 16When a human population is exposed to a pathogenic virus, the outcomes among individuals may include asymptomatic, mild, severe, or no infection. Multiple parameters control these responses, including the amount of virus taken up, the age of the host, general health status, nutrition, and more. With the advent of whole exome sequencing we can now assess the role of genotype in disease severity, as illustrated by a study of a child with severe recurrent rhinovirus infections.

[Read more…] about An inborn error of innate immunity leading to severe rhinovirus infections

Filed Under: Basic virology, Information Tagged With: IFIH1, IFN, inborn error, innate immune sensor, MDA5, missense, respiratory infection, rhinovirus, viral, virology, virus, viruses

TWiV 514: Staying below the ADAR

7 October 2018 by Vincent Racaniello

The TWiVumvirate reviews this years crop of Nobel Prizes, and how cells prevent leakage of mitochondrial double-stranded RNA into the cytoplasm, which would otherwise lead to the production of interferon.

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Filed Under: This Week in Virology Tagged With: ADAR1, Alu, checkpoint blockade, CTLA-4, degradosome, directed evolution, dsRNA, helicase, IFN, innate immunity, MDA5, mitochiondria, mutagenesis, Nobel Prize, PD-1, phage display, RNA sensor, type 1 interferonopathy, viral, virology, virus, viruses

Mitochondrial double-stranded RNA is dangerous

4 October 2018 by Vincent Racaniello

mitochondrionMitochondria are descended from bacteria that invaded cells 1.5 billion years ago and never left. The mitochondrial genome is like that of bacteria: circular double-stranded DNA, only smaller. And just like the genome of bacteria, RNA can be made from both strands of mitochondrial DNA – which results in the formation of dsRNA. Fortunately there are systems in place to make sure that this dsRNA does not cause excessive interferon (IFN) production, which would damage the cell.

[Read more…] about Mitochondrial double-stranded RNA is dangerous

Filed Under: Basic virology, Information Tagged With: dsRNA, innate immunity, interferon, interferonopathy, MDA5, mitochondria, viral, virology, virus, viruses

TWiV 455: Pork and genes

20 August 2017 by Vincent Racaniello

Erin Garcia joins the TWiVirions to discuss a computer exploit encoded in DNA, creation of pigs free of endogenous retroviruses, and mutations in the gene encoding an innate sensor of RNA in children with severe viral respiratory disease.

 

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Filed Under: This Week in Virology Tagged With: computer security, CRISPR/Cas9, DNA based exploit, IFIH1, loss of function, MDA5, organ transplant, PERV, PERV free pig, porcine endogenous retrovirus, remote code execution, respiratory syncytial virus, rhinovirus, severe viral respiratory infection, viral, virology, virus

Sensor face

14 February 2009 by Vincent Racaniello

PrintWhile preparing a figure for a review article on innate sensing of RNA, I realized that the image was taking on facial features. I thought the readers of virology blog might be amused by the image that I created. Click on the thumbnail at left for a larger view. Now you know that I have a sense of humor!

The ‘eyebrow’ is a molecule of double-stranded RNA, typically produced in some virus-infected cells. These RNAs are detected in the cell cytoplasm by two proteins, RIG-I and MDA5 (the ‘eyes’). When these innate sensor proteins bind RNA, they trigger a signal transduction cascade that ultimately leads to activation of transcription proteins and induction of interferon mRNA synthesis. This signal transduction cascade requires interaction of RIG-I and MDA5 with a protein called IPS-1 that is located in the outer membrane of the mitochondrion (the mouth and teeth).

We’ll certainly cover the topic of innate sensing of viral RNA in more detail in future posts. For now, have a laugh and a good weekend.

Who said that learning science can’t be enjoyable?

Filed Under: Information Tagged With: dsRNA, innate immunity, MDA5, RIG-I

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by Vincent Racaniello

Earth’s virology Professor
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