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About viruses and viral disease

H5N1

Avian H5N1 influenza and biosecurity on Science Friday

6 January 2012 by Vincent Racaniello

Science FridayI will be on NPR’s Science Friday this afternoon (6 January, 2 PM EST) to discuss the H5N1-NSABB story. You can listen live, or download the recording which will be available later.

I written three posts (one, two, three) about the ferret H5N1 experiments and why the NSABB should not prevent the publication of these data.

I’m a bit dismayed that Science Friday tweeted about this event earlier today saying “Today, 2-3p ET we’ll talk about the placebo effect. Then, we’ll tackle the debate over research into making influenza more deadly.” I had hoped for a less sensational, and scientifically accurate description from a well-respected science program.

Making influenza virus more deadly is not what this research was about. The over-hyping of the entire H5N1 story (both by scientists and the press) is what has got us into this situation in the first place. On Science Friday I hope to focus on the science which does not support restricting publication of the H5N1 ferret results.

Update: Here is a recording of this SciFri episode (27 MB mp3).

I thought it was interesting that Dr. Henderson discounted the possibility that there is widespread H5N1 seropositivity in rural Asian populations. His reason was that, among all the H5N1 infections, no seropositivity has been observed in their contacts. This would be expected as the H5N1 viruses are known not to be transmitted among humans! Where we would expect to see wide seropositivity is among workers who have frequent contact with poultry, not in the contacts of those who have been infected with the virus.

Dr. Henderson also stated that the experiment done in the Fouchier lab was ‘a little more than passage from ferrets to ferrets’. What he alluded to are the mutations introduced into the starting H5N1 virus to allow it to bind sialic acid receptors found in the mammalian respiratory tract. These types of modifications are widely known in the virology community and could easily be done before passaging the virus in ferrets.

Filed Under: Events Tagged With: bioterrorism, H5N1, influenza, nsabb, pandemic, science friday, viral, virology, virus

Should we fear avian H5N1 influenza?

3 January 2012 by Vincent Racaniello

influenza virus

The only thing we have to fear is fear itself – Franklin D. Roosevelt

Why is there such widespread fear of avian H5N1 influenza virus?

Why did Paul Keim, chair of the National Science Advisory Board for Biosecurity (NSABB) say “I can’t think of another pathogenic organism that is as scary as this one”.  What lead Donald McNeil, writing about H5N1 in the New York Times, to conclude that “In its natural form, it is known to have infected only about 600 people since its discovery in 1997, but it killed more than half of them.”

McNeil’s statement is incorrect. Yet it summarizes why Paul Keim, the NSABB, and many others fear the virus.

The problem is that we cannot say with any certainty that the virus has infected only about 600 people. What we do know is that among the 600 seriously ill individuals infected with influenza H5N1 who are admitted to hospital, over half of them die.

To know the fatality rate of avian H5N1 influenza virus in humans, we need to divide the number of fatalities by the number of infections. We do not know that last number – but there are hints that it could be quite large. In a recent study of rural Thai villagers, sera from 800 individuals were collected and analyzed for antibodies against several avian influenza viruses, including H5N1, by hemagglutination-inhibition and neutralization assays. The results indicate that 73 participants (9.1%) had antibody titers against one of two different H5N1 strains. The authors conclude that ‘people in rural central Thailand may have experienced subclinical avian influenza virus infections’. A subclinical infection is one without apparent signs of illness.

If 9% of the rural Asian population has been subclinically infected with avian H5N1 influenza virus strains, it would dramatically change our view of the pathogenicity of the virus. Extensive serological studies must be done to determine the extent of human infection with avian H5N1 influenza viruses.

Until we know how many individuals are infected with avian influenza H5N1, we must refrain from making dire conclusions about the pathogenicity of the virus. Doing so has only lead us down a dangerous path of fearing that H5N1 influenza virus might be used as a weapon of bioterrorism, and restricting the publication of scientific papers on the virus.

Update. A meta-analysis reveals that about 1.3% of over 8,500 study participants had serological evidence of infection with influenza H5N1 (Palese, personal communication).

Khuntirat, B., Yoon, I., Blair, P., Krueger, W., Chittaganpitch, M., Putnam, S., Supawat, K., Gibbons, R., Pattamadilok, S., Sawanpanyalert, P., Heil, G., Friary, J., Capuano, A., & Gray, G. (2011). Evidence for Subclinical Avian Influenza Virus Infections Among Rural Thai Villagers Clinical Infectious Diseases, 53 (8) DOI: 10.1093/cid/cir525

Filed Under: Information Tagged With: avian influenza, bioterrorism, H5N1, influenza, nsabb, viral, virology, virus

TWiV 164: Six steps forward, four steps back

1 January 2012 by Vincent Racaniello

xmrvHosts: Vincent Racaniello, Rich Condit, and Alan Dove

Vincent, Alan, and Rich review ten compelling virology stories of 2011.

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[powerpress url=”http://traffic.libsyn.com/twiv/TWiV164.mp3″]

Click the arrow above to play, or right-click to download TWiV 164 (60 MB .mp3, 99 minutes).

Subscribe to TWiV (free) in iTunes , at the Zune Marketplace, by the RSS feed, by email, or listen on your mobile device with the Microbeworld app.

Ten virology stories of 2011:

  1. XMRV, CFS, and prostate cancer (TWiV 119, 123, 136, 150)
  2. Influenza H5N1, ferrets, and the NSABB (TWiV 159)
  3. The Panic Virus (TWiV 117)
  4. Polio eradication (TWiV 127, 149)
  5. Viral oncotherapy (TWiV 124, 131, 142, 156)
  6. Hepatitis C virus (TWiV 130, 137, 141)
  7. Zinc finger nuclease and HIV therapy (TWiV 144)
  8. Bacteria help viruses (TWiV 154)
  9. Human papillomaviruses (TWiV 126)
  10. Combating dengue with Wolbachia (TWiV 115, 147)

Links for this episode:

  • Honorable mention: Color me infected (TWiV 115)
  • Lo-Alter retraction (PNAS)
  • Propose an ASM General Meeting session
  • TWiV on Facebook
  • Letters read on TWiV 164

Weekly Science Picks

Rich – Fundamentals of Molecular Virology by Nicholas H. Acheson
Alan – Fetch, with Ruff Ruffman
Vincent – Year end reviews at Rule of 6ix and Contagions

Listener Pick of the Week

Garren – Trillion-frame-per-second video
Judi – iBioMagazine
Ricardo –
Brain Picking’s 11 best science books of 2011

Send your virology questions and comments (email or mp3 file) to twiv@microbe.tv, or call them in to 908-312-0760. You can also post articles that you would like us to discuss at microbeworld.org and tag them with twiv.

Filed Under: This Week in Virology Tagged With: AIDS, anti-vaccine, bioterrorism, CFS, chronic fatigue syndrome, Dengue, H5N1, hepatitis C virus, HIV, HPV, human papillomavirus, influenza, nsabb, panic virus, polio eradication, prostate cancer, retrovirus, symbiosis, vaccination, viral, viral oncotherapy, virology, virus, wolbachia, xmrv, zinc finger

A bad day for science

20 December 2011 by Vincent Racaniello

The virologists who carried out the contentious experiments on influenza H5N1 transmission in ferrets have agreed to remove certain details from their manuscript, according to ScienceInsider:

Two groups of scientists who carried out highly controversial studies with the avian influenza virus H5N1 have reluctantly agreed to strike certain details from manuscripts describing their work after having been asked to do so by a U.S. biosecurity council. The as-yet unpublished papers, which are under review at Nature and Science, will be changed to minimize the risks that they could be misused by would-be bioterrorists.

Apparently a second manuscript on similarly sensitive material, submitted to Nature, has been studied by the NASBB and its details will also be redacted. Members of both scientific groups disagree with the decision.

The article hints that details of the experiments may be made available to influenza virologists ‘with a legitimate interest in knowing them’. Who will decide what constitutes a legitimate interest? And what if a virologist, or another scientist who does not work on influenza virus, has an idea for an experiment and would like the details? Will they be denied because they are not card-carrying influenza virologists? Science often works in unusual ways, and one of them is that difficult problems are often solved by individuals from different areas of research.

I agree with Albert Osterhaus, who noted that this debate could have been held in 2005 when the complete genome sequence of the 1918 pandemic influenza virus strain was released. That H1N1 strain is known to be lethal and transmitted efficiently among humans. In contrast, it is not known if the ferret-passaged influenza H5N1 virus would be transmitted in people and cause disease.

This is a bad day for virology, and for science in general. The decision by the NSABB sets a precedent for censoring future experimental results whose wide dissemination would benefit, not harm, humanity.

Update: A member of the NSABB has written about the committee’s thoughts on this issue. See comments below.

Filed Under: Information Tagged With: bioterrorism, H5N1, influenza, nsabb, viral, virology, virus

Ferreting out influenza H5N1

6 December 2011 by Vincent Racaniello

A laboratory in the Netherlands has identified a lethal influenza H5N1 virus strain that is transmitted among ferrets. These findings are under review by the National Science Advisory Board for Biosecurity (NSABB) to ensure that they do not constitute a threat to human health. Meanwhile both the popular and scientific press has been calling this a ‘virus that could change world history’. Even the usually restrained Helen Branswell writes that “…the dangerous virus can mutate to become easily transmissible among ferrets — and perhaps humans…” Should we be frightened?

Details of Ron Fouchier’s experiments are not known because the results have not yet been published. Reports at CIDRAP and Science indicate that Fouchier was attempting to make the H5N1 virus more transmissible in ferrets. This strain of influenza is lethal in birds and humans – there have been over 500 human cases with over 50% mortality. However, the virus is not readily transmitted among humans. The virus is lethal in ferrets but does not transmit among the animals. Fouchier selected a transmissible H5N1 variant by ferret-to-ferret passage. This experiment involves infecting a ferret, harvesting virus from the animal, and infecting another ferret. After ten such passages, the H5N1 variant could spread from one ferret to another by airborne transmission. The two amino acid changes that permit airborne spread among ferrets were identified.

Scientists appear to be responsible for the hype surrounding this experiment. Fouchier called it ‘one of the most dangerous viruses you can make’. Paul Keim, chair of NSABB, ‘can’t think of another pathogenic organism that is as scary as this one’, and Richard Ebright, a molecular biologist at Rutgers University says the experiment should not have been done. Martin Enserink writing in ScienceInsider says that the virus could change world history, and similar proclamations of doom can be found in the popular press.

I cannot fault the press for not having the background to interpret these studies, but scientists should know better than to declare that this is a dangerous virus. First and foremost, ferrets are not humans. Every influenza researcher will say that ferrets are a good model for influenza – they display similar flu-like symptoms, immune responses, and pathological alterations such as elevated temperature, weight loss, and histological changes. But it would be foolish to conclude that ferret influenza is the same as human influenza in all aspects. For example, not all influenza virus strains have the same virulence in humans and ferrets. A good example is the 2009 pandemic H1N1 virus which caused severe infections in some ferret studies, but was relatively mild in humans.

In other words, just because the Fouchier H5N1 virus is transmissible among ferrets does not mean that it will be equally transmissible among humans. The experiment to answer this question cannot be done.

Passage of viruses in a different host is one strategy for reducing the virulence in humans. This concept is explained in this passage from Principles of Virology:

Less virulent (attenuated) viruses can be selected by growth in cells other than those of the normal host, or by propagation at nonphysiological temperatures. Mutants able to propagate better under these selective conditions arise during viral replication. When such mutants are isolated, purified, and subsequently tested for pathogenicity in appropriate models, some may be less pathogenic than their parent.

The possibility that passage of the H5N1 virus in ferrets will attenuate its virulence in humans has been ignored.

In my view, it is highly unlikely that laboratory-modified viruses will be able to cause extensive disease in humans. When humans tinker with viruses, they generally do not know what the virus needs to replicate efficiently, cause disease, and transmit in humans. Consequently, they are likely to introduce changes that attenuate pathogenesis in humans. Nature is far better at producing viruses that can kill – to think that we can duplicate the enormous diversity and selection pressures that occur in the wild is a severe case of scientific hubris.

Another aspect of this story that deserves comment is the review by the NSABB. That body is charged with reviewing experiments that would render a vaccine ineffective; confer resistance to antimicrobial agents; enhance the virulence of a pathogen or make a non-pathogen virulent; increase transmissibility of a pathogen; enable evasion of detection; and enable weaponization of a biological agent or toxin. It is not clear to me how this committee could make some of these conclusions without data from human experiments. Nevertheless, why would the NSABB recommend against publication of Fouchier’s data? Could the sequence of the ferret adapted H5N1 be used for bioterrorism? It seems unlikely: it is not known if the virus would be pathogenic and transmissible in humans. Bioterrorists do not want to carry out an experiment; they want to instill terror. Why use a laboratory modified H5N1 strain when the sequence of the 1918 influenza virus, known to be a lethal and transmissible human virus, is readily available? Ebright calls the 1918 virus “the most effective bioweapons agent now known”.

No one can guarantee that Fouchier’s virus would not be lethal and transmissible in humans. But the same could be said about any number of laboratory modified viruses, none of which have attracted the attention of the NSABB or the press. When dealing with viruses, both caution and restraint are necessary qualities.

This article is based on the conversation with Rich Condit and Alan Dove on TWiV 159 and 160.

Filed Under: Commentary, Information Tagged With: bioterrorism, ferret, fouchier, H5N1, influenza, nsabb, pandemic, viral, virology, virus

TWiV 159: Flu gets the REDD light

28 November 2011 by Vincent Racaniello

ferretHosts: Vincent Racaniello, Alan Dove, and Rich Condit

Vincent, Alan, and Rich review concern over an influenza H5N1 transmission experiment, and a new host defense protein against RNA viruses.

Please help us by taking our listener survey.

[powerpress url=”http://traffic.libsyn.com/twiv/TWiV159.mp3″]

Click the arrow above to play, or right-click to download TWiV 159 (48 MB .mp3, 80 minutes).

Subscribe to TWiV (free) in iTunes , at the Zune Marketplace, by the RSS feed, by email, or listen on your mobile device with the Microbeworld app.

Links for this episode:

  • Concern over H5N1 transmission experiment (CIDRAP)
  • Information on NSABB
  • Enserink’s overstated story (Science)
  • New cell defense protein against RNA viruses (Nature Chem Biol)
  • Uta Schwedler obituary (jpg)
  • TWiV on Facebook
  • Letters read on TWiV 159

Weekly Science Picks

Rich – Livescribe Smartpen
Alan – Royal Society journal archive
Vincent – Chronic fatigue syndrome and the CDC by Dave Tuller

Listener Pick of the Week

Judi – Top 7 in Microbiology

Send your virology questions and comments (email or mp3 file) to twiv@microbe.tv, or call them in to 908-312-0760. You can also post articles that you would like us to discuss at microbeworld.org and tag them with twiv.

Filed Under: This Week in Virology Tagged With: biosafety, fouchier, H5N1, host defense, influenza, pandemic, REDD, viral, virology, virus

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by Vincent Racaniello

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