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chronic fatigue syndrome

XMRV at Cold Spring Harbor

7 May 2010 by Vincent Racaniello

Cold Spring Harbor Laboratory (CSHL) is a private, non-profit institution located in the eponymous town on Long Island, New York. Over 400 scientists work there on a wide range of biological problems, including cancer, neurobiology, plant genetics, and genomics. CSHL has a storied research history, having hosted nine Nobel Laureates. But it is also well known for its world class scientific conferences. The first of these was the Cold Spring Harbor Laboratory Symposium on Quantitative Biology, which was held in 1934. Another well known event is the Phage Course, founded by Salvador Luria and Max Delbrück in 1948. There are now over 24 meetings held annually. One of these is the meeting on retroviruses, which will begin on 24 May 2010. Below is a list of the presentations about XMRV, the new retrovirus implicated in prostate cancer and chronic fatigue syndrome. The author presenting each study can be found at the meeting website.

  • Failure to detect XMRV in human prostate tumors
  • Development of a multiplex serological assay to detect XMRV antibodies
  • Characterization of cellular determinants required for infection of XMRV, a novel retrovirus associated with human familial prostate cancer
  • Screening mouse genomes For XMRV-Like Elements
  • Development of highly sensitive assays for the detection of XMRV nucleic acids in clinical samples
  • Compounds that inhibit replication of XMRV, a virus implicated in prostate cancer and chronic fatigue syndrome
  • Investigation of XMRV as a human pathogen
  • Investigations into XMLV-related virus infection
  • XMRV is not detected in Quebec patients with chronic fatigue syndrome
  • Wild-derived mouse strain (Mus pahari) as a small animal model for XMRV infection
  • XMRV tropism in hematopoietic cells
  • Evidence for sequence variation in XMRV
  • The human retrovirus XMRV produces rare transformation events in cell culture but does not have direct transforming activity
  • The XMRV is inhibited by APOBEC3 proteins and anti-HIV-1 drugs
  • Immune responses in XMRV-infected rhesus macaques—Serological markers of XMRV infection
  • XMRV Is inhibited by interferon independently of RNase L or Tetherin
  • Comparison of XMRV infections in humans and rhesus macaques
  • Susceptibility of XMRV to antiretroviral inhibitors
  • Integration site analysis in XMRV-positive prostate cancers
  • Xpr1 is necessary but not sufficient for XMRV entry
  • Effects of interferon regulated proteins, RNase L and APOBEC3G, on XMRV replication

The retrovirus community has clearly embraced XMRV, a virus discovered just four years ago. This high level of activity means that there will be many papers on XMRV in the scientific literature in the next year. I’m looking forward to discussing them with the readers of virology blog.

Filed Under: Information Tagged With: CFS, chronic fatigue syndrome, cold spring harbor, prostate cancer, retrovirus, viral, virology, virus, xmrv

Inhibition of XMRV by a weapon of mass deamination

20 April 2010 by Vincent Racaniello

deaminationCtoUAll mammalian genomes contain genes encoding Apobec proteins. Several members of this protein family (the name stands for apolipoprotein B mRNA editing complex) are induced by interferon and are intrinsic antiretroviral proteins. Apobec proteins inhibit the replication of XMRV, a new human retrovirus associated with prostate cancer and chronic fatigue syndrome.

During retroviral replication, Apobec proteins are packaged into newly synthesized retrovirus particles (illustrated). apobec_virionThey exert their antiviral effect when Apobec-containing virions infect a new cell. As the viral reverse transcriptase begins to copy viral RNA into DNA, Apobec removes an amine group from cytosines in single stranded DNA, a process called deamination.  The consequence of deamination is that cytosine is changed to uracil. Uracil-containing DNA may be attacked by uracil DNA glycosidase, which removes the base and makes the DNA susceptible to degradation. If deaminated DNA is copied to form a double-stranded molecule, the new Us pair with As. In other words, deamination leads to a G-to-A mutation in the viral DNA. The highly mutated DNA cannot encode viable viruses, and the infection is terminated. For this reason one retrovirologist has called Apobec a WMD – a weapon of mass deamination.

Apobec is lethal for retroviruses that incorporate the enzyme into their virions. Human immunodeficiency virus-1 counters this defense by producing the Vif protein, which binds to Apobec and promotes its degradation by cellular enzymes.

XMRV does not encode a Vif protein and should be susceptible to inhibition by Apobec proteins. To answer this question, XMRV virions were produced in cells in the presence of different Apobec proteins. The deaminases were incorporated into virions, where they resulted in G-to-A hypermutation and inhibition of viral infectivity.

Could the presence of Apobec determine which human tissues are infected with XMRV? The virus replicates very well in a prostate cancer cell line, LNCaP, which produces reduced levels of Apobec proteins. Whether Apobec could regulate XMRV replication in the prostate is not known because expression of the protein in normal or malignant prostate tissues has not been studied. A conundrum which requires further investigation concerns the isolation of XMRV from CD4+ T and B cells, which are known to synthesize Apobec proteins. How XMRV might evade Apobec inhibition in these cells remains unexplained.

Paprotka, T., Venkatachari, N., Chaipan, C., Burdick, R., Delviks-Frankenberry, K., Hu, W., & Pathak, V. (2010). Inhibition of Xenotropic Murine Leukemia Virus-Related Virus by APOBEC3 Proteins and Antiviral Drugs Journal of Virology DOI: 10.1128/JVI.00134-10

Groom, H., Yap, M., Galao, R., Neil, S., & Bishop, K. (2010). Susceptibility of xenotropic murine leukemia virus-related virus (XMRV) to retroviral restriction factors Proceedings of the National Academy of Sciences, 107 (11), 5166-5171 DOI: 10.1073/pnas.0913650107

Filed Under: Basic virology, Information Tagged With: apobec, CFS, chronic fatigue syndrome, hypermutation, prostate cancer, retrovirus, vif, viral, virology, virus, xmrv

Inhibitors of XMRV

7 April 2010 by Vincent Racaniello

Raltegravir inhibition XMRVXenotropic murine leukemia virus related virus (XMRV) has been implicated in prostate cancer and chronic fatigue syndrome (CFS). Because XMRV is a retrovirus, it might be susceptible to antiviral drugs that are licensed for the treatment of AIDS. AZT (azidothymidine) was previously found to block XMRV replication. A screen of forty-five compounds reveals that XMRV replication is inhibited by raltegravir and three other drugs.

The authors studied the effect of 45 compounds on the replication of XMRV in cell lines derived from human breast (MCF-7) and prostate (LNCaP) cancers. Twenty-eight of the drugs have been approved for use in humans, including treatment of HIV-1 infection. The drugs tested include nucleoside and non-nucleoside reverse-transcriptase inhibitors, and integrase and protease inhibitors. Other inhibitors used included aspirin, acylclovir (the anti-herpesvirus drug), and chloroquine (complete list here).

To test the ability of the drugs to inhibit XMRV replication, cells were infected with the virus, and increasing amounts of the compound were added to the cell culture medium. After incubation for six days, the virus in the culture medium was assayed by measuring reverse transcriptase activity. This enzyme, which converts RNA to DNA, is packaged within the viral particle. Its presence in the cell culture medium is therefore a measure of viral production. The cells were also monitored for cytotoxicity to ensure that a reduction in viral release was a consequence of specific antiretroviral activity, not toxicity of the compounds.

The most potent inhibitor of XMRV was raltegravir, the compound that blocks the viral integrase protein. This viral protein is essential for insertion of viral DNA into the host chromosome. The EC50 (the concentration of drug that inhibited virus production by 50%) was 0.005 µM in MCF-7 cells and 0.03 µM in LNCaP cells. Another integrase inhibitor, called L-000870812, also blocked XMRV replication, but at higher concentrations (EC50 of 0.16 µM in MCF-7 cells, and 0.7 µM in LNCaP cells).

Other drugs were found to inhibit XMRV replication at much higher concentrations. Among the most effective were zidovudine (ZDV; EC50 0.11 µM in MCF-7 cells and 0.14 µM in LNCaP cells) and tenofovir disoproxil fumarate (TDF). Protease inhibitors were less effective at blocking XMRV replication. Other non-HIV inhibitors were not effective at concentrations which were not cytotoxic.

The problem of drug resistance during treatment of AIDS was made manageable by using combinations of three antiviral compounds. Pairwise combinations of raltegravir, L-000870812, TDF and ZDV were tested for activity against XMRV in LNCaP cells.The effects were either additive or synergistic. All combinations that included raltegravir showed synergy without cytotoxicity. This observation is good news for treating XMRV infection. Based on the response of other retroviruses to combination therapy, the use of two antiviral drugs might suppress XMRV replication, reduce disease, and reduce emergence of resistant viral mutants.

How well do these drugs inhibit XMRV compared with HIV-1? The authors write that “Relative to HIV-1, the compounds were generally less potent against XMRV than HIV-1, especially at the EC90 level” – the concentration of drug needed to inhibit virus production by 90%. It’s difficult to predict from these data whether the drugs would be effective at effectively reducing XMRV levels in an infected individual. Chemical modification of the compounds could yield drugs that are more active against XMRV.

No matter what antiviral drugs are used, resistant viral variants inevitably emerge. For XMRV the process may be less problematic than for HIV-1. Compared with HIV-1, isolates of XMRV isolates have limited sequence diversity. The genomes of all the XMRV isolates obtained to date differ from each other at 27 out of 8,100 nucleotides. If this lack of diversity is a consequence of limited replication in the host, then the emergence of drug resistant variants could be significantly lower than HIV-1. A combination of two drugs might therefore be effective in treating XMRV infection. The authors note that after several months of propagating XMRV in the presence of raltegravir, drug resistant viruses have not emerged. But a human is very different from a dish of cultured cells.

Whether or not combinations of these drugs can be used to treat XMRV infection awaits the results of additional epidemiological studies, as well as clinical trials to determine efficacy. As the authors conclude:

If XMRV proves to be a causal factor in prostate cancer or CFS, these discoveries may allow for rational design of clinical trials.

Raltegravir has been previously shown to inhibit murine leukemia virus, which is highly related to XMRV. But the drug exacerbates autoimmune disease in mice which might rule out its use in treating CFS.

Ila R. Singh1, John E. Gorzynski, Daria Drobysheva, Leda Bassit, & Raymond F. Schinazi (2010). Raltegravir Is a Potent Inhibitor of XMRV, a Virus Implicated in Prostate Cancer and Chronic Fatigue Syndrome PLoS One : 10.1371/journal.pone.0009948

Filed Under: Basic virology, Information Tagged With: AIDS, antiviral, CFS, chronic fatigue syndrome, HIV-1, raltegravir, viral, virology, virus, xmrv

TWiV 76: XMRV with Professor Stephen Goff

4 April 2010 by Vincent Racaniello

Hosts: Vincent Racaniello and Stephen Goff

Vincent speaks with Stephen Goff about the origin of the retrovirus XMRV and its association with prostate cancer and chronic fatigue syndrome.

This episode is sponsored by Data Robotics Inc. Use the promotion code TWIVPOD to receive $75-$500 off a Drobo.

Win a free Drobo S! Contest rules here.

[powerpress url=”http://traffic.libsyn.com/twiv/TWiV076.mp3″]

Click the arrow above to play, or right-click to download TWiV #76 (40 MB .mp3, 55 minutes)

Subscribe to TWiV (free) in iTunes , at the Zune Marketplace, by the RSS feed, or by email.

Links for this episode:

  • Discovery of XMRV in prostate tumors
  • Association of XMRV with chronic fatigue syndrome
  • Enhanced infection of prostate cells by XMRV
  • XMRV and xenotransplantation

Send your virology questions and comments (email or mp3 file) to twiv@microbe.tv or leave voicemail at Skype: twivpodcast. Post articles that you would like us to discuss at microbeworld.org and tag them with twiv.

Filed Under: This Week in Virology Tagged With: CFS, chronic fatigue syndrome, retrovirus, stephen goff, viral, virology, virus, xmrv

XMRV not detected in Dutch chronic fatigue patients

26 February 2010 by Vincent Racaniello

dutch_cfs_xmrvThe suggestion that the retrovirus XMRV is the etiologic agent of chronic fatigue syndrome (CFS) arose from a study in which the virus was found in 68 of 101 US patients. The virus was not detected in two independent studies of 186 and 170 CFS patients in the United Kingdom. A new Dutch study has also failed to reveal XMRV sequences in 32 CFS patients.

The subjects of the Dutch study were part of a 298 member cohort. All patients fulfilled the Oxford criteria for CFS and reported debilitating fatigue for at least one year. Cryopreserved peripheral blood cells taken from 32 of these individuals between 1991-92 were used for preparation of DNA. This material was then subjected to polymerase chain reaction to amplify proviral XMRV DNA. The primer sets used were the same as those employed in the US study. Under the PCR conditions used, at least 10 copies of XMRV sequences could be detected per 100,000 peripheral blood mononuclear cells. All samples from CFS patients and from controls were negative for two different XMRV genes encoding integrase and gag proteins.

The authors consider a number of reasons why their results differ from those in the initial US CFS study. They rule out (1) technical differences; (2) The possibility that the long duration of CFS in the Dutch cohort may have led to negative results, because retroviruses integrate into the genome of the host; (3) cryopreservation; and (4) differences in cohorts. They suggest that XMRV might be involved in CFS outbreaks but not in sporadic CFS:

…the peripheral blood mononuclear cells [used in the US study] were derived from patients from the outbreak of chronic fatigue syndrome at Incline village at the northern border of Lake Tahoe, United States (1984-5). This outbreak has long been thought to have been caused by a viral infection and has been associated with a number of viruses, most notably Epstein-Barr virus and human herpes virus but firm evidence for a role of viruses in this particular outbreak has never been provided. It is possible that the study of Lombardi et al has unravelled the viral cause of the chronic fatigue syndrome outbreak, but it seems unlikely that their study demonstrates a viral association for sporadic chronic fatigue syndrome cases, such as those we tested, or represents the majority of patients. Studies of XMRV in sporadic chronic fatigue syndrome cases from the United States would be of great interest.

The authors do acknowledge the small sample size used in their study, which prevents them from statistically ruling out a role for XMRV in CFS. Nevertheless they conclude that “our data cast doubt on the claim that this virus is associated with chronic fatigue syndrome in the majority of patients.”

My office neighbor here at Columbia University Medical Center is Dr. Stephen Goff, an expert on retroviruses who has begun to investigate XMRV in his laboratory. He recently gave a plenary lecture on XMRV at the Conference on Retroviruses and Opportunistic Infections in San Francisco; you can hear some of his comments at medpage today. I poked my head in his office yesterday and asked him what he thought of the story so far. His answer: everyone needs to exchange samples, and they are not doing it. I couldn’t agree more.

Frank J M van Kuppeveld, Arjan S de Jong, Kjerstin H Lanke, Gerald W Verhaegh, Willem J G Melchers, Caroline M A Swanink, Gijs Bleijenberg, Mihai G Netea, Jochem M D Galama, & Jos W M van der Meer (2010). Prevalence of xenotropic murine leukaemia virus-related virus in patients with chronic fatigue syndrome in the Netherlands: retrospective analysis of samples from an established cohort British Medical Journal : 10.1136/bmj.c1018

Filed Under: Basic virology, Information Tagged With: CFS, chronic fatigue syndrome, retrovirus, viral, virology, virus, xmrv

TWiV #70: Hacking aphid behavior

21 February 2010 by Vincent Racaniello

Hosts: Vincent Racaniello, Dickson Despommier, and Alan Dove

On episode #70 of the podcast ‘This Week in Virology’, Vincent, Dickson, and Alan consider a broad spectrum antiviral against enveloped viruses, how a plant virus induces chemical signals in the host to maximize its spread, a new way to preserve viral vaccines at tropical temperatures, and the continuing story of XMRV and chronic fatigue syndrome.

This episode is sponsored by Data Robotics Inc. Use the promotion code VINCENT to receive $50 off a Drobo or $100 off a Drobo S.

Win a free Drobo S! Contest rules here.

[powerpress url=”http://traffic.libsyn.com/twiv/TWiV070.mp3″]

Click the arrow above to play, or right-click to download TWiV #70 (56 MB .mp3, 77 minutes)

Subscribe to TWiV (free) in iTunes , at the Zune Marketplace, by the RSS feed, or by email.

Links for this episode:

  • Broad spectrum antiviral against enveloped viruses
  • Chemical signals induced by a plant virus attract insect vectors to inferior hosts
  • New vaccine technology to make viral vaccines stable at tropical temperatures
  • Second UK study fails to find XMRV in chronic fatigue syndrome patients (pdf)
  • Nature podcast with Simon Singh and petition (thanks André!)
  • Letter on Wolbachia and bees (thanks Tom!)
  • Dickson fishing in Argentina (jpg)

Weekly Science Picks

Dickson Chemical Ecology – edited by Thomas Eisner and Jerrold Meinwald
Alan Scripps Center for Mass Spectrometry
Vincent Folding@home (thanks Jesper!)

Send your virology questions and comments (email or mp3 file) to twiv@microbe.tv or leave voicemail at Skype: twivpodcast. You can also post articles that you would like us to discuss at microbeworld.org and tag them with twiv.

Filed Under: This Week in Virology Tagged With: antiviral, aphid, CFS, chronic fatigue syndrome, enveloped virus, influenza, plant virus, podcast, TWiV, vaccine, viral, viral host, virology, virus, xmrv

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