bioinformatics

Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology

from Brian Foley: 18th International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology University of Florida, Emerging Pathogens Institute Gainesville, Florida, USA August 25th – August 30th, 2013 Bioinformatics Methods Applied to Virology and Epidemiology Announcing the organization of the international workshop on Virus Evolution and Molecular Epidemiology (VEME) in 2013, hosted by the Emerging …

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TWiV 192: Viral tertulia

On episode #192 of the science show This Week in Virology, Vincent, Alan, and Rich answer listener email about bioinformatics, insects, influenza, laboratory classes, commensalism, reproducibility of data, and more. You can find TWiV #192 at www.microbe.tv/twiv.

Viral Bioinformatics: Multiple sequence alignment – Jalview

This week€™s addition to the virology toolbox was written by Chris Upton The Jalview package: a multiple alignment editor. This software is primarily aimed at the alignment of protein sequences. Some of the key features are: It allows you to edit the alignment It has functions to display associated protein structures It can connect to …

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Viral bioinformatics: Recombination

This week€™s addition to the virology toolbox was written by Danielle Coulson and Chris Upton Comparing genomes of viral strains can provide very useful insight into evolutionary relationships. Recombination, defined by Posada et al (2001) as the exchange of genetic information between two nucleotide sequences, is quite common in many viruses. Because recombination accounts for …

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