TWiV 362: Gotta catch ’em all

On episode #362 of the science show This Week in Virology, the virus virtuosos, with their usual verve, illuminate a new method to identify all the viral nucleic acids in a sample, and regulation of viral gene expression by codon usage.

You can find TWiV #362 at

TWiV 167: It starts with a cough

Lipkin in ContagionHosts: Vincent Racaniello, Dickson DespommierRich Condit, and Alan Dove

The complete TWiVome deconstructs the movie Contagion.

Click the arrow above to play, or right-click to download TWiV 167 (53 MB .mp3, 88  minutes).

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Weekly Science Picks

DicksonGuinea Pig Doctors by Jon Franklin
RichLearn to appreciate technology and Everythings amazing and nobodys happy (YouTube)
Alan – JD Hooker slide collection
VincentiTunes U app and iBooks Author

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JudiMakers of Many Things by Eva March Tappan

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Contagion: The trailer

contagionContagion is the name of a new action-thriller movie about a global outbreak of a deadly viral disease. The trailer is now available. From the website:


“Contagion” follows the rapid progress of a lethal airborne virus that kills within days. As the fast-moving epidemic grows, the worldwide medical community races to find a cure and control the panic that spreads faster than the virus itself. At the same time, ordinary people struggle to survive in a society coming apart.

I hope they get the science right. We’ll see when it opens on 9 September 2011.

Reovirus infection of farmed salmon

Global fish farming may be the solution to the impending collapse of the commercial fishing industry, but penned fish are susceptible to infectious diseases. Infection with salmon infectious anemia virus, an orthomyxovirus, lead Wal-Mart to stop buying farmed salmon from Chile, the world’s second largest producer of the fish. As a consequence Chilean farmed salmon are being immunized to prevent infection. Heart and skeletal muscle inflammation (HSMI) is another disease of farmed salmon, first detected in Norway – the world’s largest supplier of the fish – in 1999. The results of deep sequencing suggest that HSMI is caused by a novel piscine reovirus.

HSMI was transmitted to salmon by inoculation with tissue extracts of diseased fish or by co-habitation. RNA was extracted from the heart and subjected to high throughput sequence analysis, which revealed the presence of a novel member of the reovirus family. These are are non-enveloped, icosahedral viruses with 10-12 segments of double-stranded RNA that infect a variety of hosts, including humans: rotaviruses are important agents of gastroenteritis.

The presence of piscine reovirus in salmon with HSMI was examined by polymerase chain reaction assays. Included were heart and kidney samples from 29 salmon from three different outbreaks of HSMI, and from 10 healthy fish. All but one of the diseased fish, and none of the healthy fish, contained PRV nucleic acid. To determine the prevalence of PRV in healthy salmon, samples were collected from 9 different Norwegian coastal waters. Sixteen of 66 (24.2%) of these fish were positive for PRV.

Is heart and skeletal muscle inflammation of salmon caused by piscine reovirus? It’s possible, but further work is needed to prove causality, as the authors write:

Formal implication of PRV in HSMI will require isolation in cell culture and fulfillment of Koch’s postulates, or prevention or modification of disease through use of specific drugs or vaccines.

It’s important to identify the etiologic agent of HSMI because it is a threat to both farmed and wild salmon. Farmed fish are kept in pens in the open ocean, facilitating spread of infectious diseases to wild fish. Knowledge of the causative agent will permit preventive measures such as immunization.

Palacios G, Lovoll M, Tengs T, Hornig M, Hutchison S, Hui J, Kongtorp RT, Savji N, Bussetti AV, Solovyov A, Kristoffersen AB, Celone C, Street C, Trifonov V, Hirschberg DL, Rabadan R, Egholm M, Rimstad E, & Lipkin WI (2010). Heart and skeletal muscle inflammation of farmed salmon is associated with infection with a novel reovirus. PloS one, 5 (7) PMID: 20634888